chgttyyr/moonbit-vcfkit/cmd/vcfkit

README
E
ParseError
T
Cardinality
T
ContigDef
T
Diagnostic
T
DiagnosticSeverity
T
FilterDef
T
FormatDef
T
GenomicInterval
T
GenotypeCall
T
GenotypeClass
T
InfoDef
T
MetaLine
T
NormalizationOutcome
T
QualitySummary
T
RecordDiff
T
RecordDiffKind
T
SampleCall
T
SampleStats
T
ValidationOptions
T
ValidationReport
T
ValueType
T
VariantClass
T
VcfDocument
T
VcfHeader
T
VcfIndex
T
VcfRecord
T
VcfStats
T
VcfValue
T
WindowSummary
V
analyze_alt_count
V
analyze_class_counts
V
analyze_contig_span
V
analyze_duplicate_keys
V
analyze_filter_rate
V
analyze_id_count
V
analyze_info_presence
V
analyze_quality
V
analyze_record_length
V
analyze_sample_count
V
analyze_total_bases
V
analyze_transitions
V
analyze_transversions
V
build_index
V
codec_escape_description
V
codec_format_bool
V
codec_format_float_list
V
codec_format_int_list
V
codec_is_missing
V
codec_join_escaped
V
codec_join_nonempty
V
codec_normalize_missing
V
codec_pad
V
codec_parse_bool
V
codec_parse_float_list
V
codec_parse_int_list
V
codec_quote
V
codec_split_escaped
V
codec_truncate
V
codec_unescape_description
V
codec_unquote
V
collect_alternate_bases
V
collect_reference_bases
V
decode_genotype
V
diff_documents
V
format_document
V
format_genotype
V
format_header
V
format_interval
V
format_record
V
format_stats
V
format_window_summary
V
genotype_alt_count
V
genotype_alt_indexes
V
genotype_class
V
genotype_dosage
V
genotype_has_allele
V
genotype_is_called
V
genotype_is_het
V
genotype_is_hom_alt
V
genotype_is_hom_ref
V
genotype_is_missing
V
group_record_counts
V
interval_clip
V
interval_contains
V
interval_distance
V
interval_expand
V
interval_intersection
V
interval_merge
V
interval_overlaps
V
interval_shift
V
interval_subtract
V
interval_width
V
make_interval
V
merge_documents
V
merge_sample_stats
V
normalize_basic
V
normalize_record
V
parse_document
V
parse_header
V
parse_meta_line
V
parse_record
V
patch_alt
V
patch_clear_info
V
patch_filters
V
patch_ids
V
patch_info
V
patch_position
V
patch_qual
V
patch_remove_info
V
patch_sample
V
patch_sample_value
V
pipeline_apply_normalization
V
pipeline_concat
V
pipeline_contigs
V
pipeline_count
V
pipeline_dedupe
V
pipeline_drop
V
pipeline_filter
V
pipeline_filters
V
pipeline_first
V
pipeline_format
V
pipeline_info_keys
V
pipeline_is_empty
V
pipeline_last
V
pipeline_limit_by_contig
V
pipeline_limit_by_interval
V
pipeline_map
V
pipeline_merge
V
pipeline_pairwise
V
pipeline_project_info
V
pipeline_project_samples
V
pipeline_query
V
pipeline_record_counts_by_class
V
pipeline_round_trip
V
pipeline_sort
V
pipeline_split_by_filter
V
pipeline_split_by_qualification
V
pipeline_split_multiallelic
V
pipeline_stats
V
pipeline_take
V
pipeline_validate
V
quality_missing_rate
V
quality_passes
V
quality_range
V
query_index
V
record_alt_count
V
record_has_info
V
record_info_float
V
record_info_int
V
record_info_value
V
record_is_indel
V
record_is_snv
V
record_key
V
record_sample
V
record_sort_key
V
record_variant_class
V
sample_alt_frequency
V
sample_call_rate
V
sample_is_high_quality
V
sample_missing_rate
V
sample_value
V
schema_contig
V
schema_contig_length
V
schema_expected_cardinality
V
schema_filter
V
schema_format
V
schema_has_sample
V
schema_has_samples
V
schema_header_width
V
schema_ids
V
schema_info
V
schema_is_genotype_format
V
schema_is_structured
V
schema_sample_index
V
schema_value_type
V
select_document_samples
V
select_info_fields
V
sort_records
V
split_multi_allelic
V
stream_document
V
stream_records
V
summarize
V
summarize_document_samples
V
summarize_fixed_windows
V
summarize_sample_calls
V
summarize_window
V
transition_transversion_ratio
V
validate_document
V
window_density
V
window_filter_fraction
V
window_is_empty
V
window_merge_summaries
V
window_snv_fraction

chgttyyr/moonbit-vcfkit/cmd/vcfkit does not have a README file

Source Files

main.mbt

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Native MoonBit toolkit for parsing, filtering, transforming, and inspecting VCF text data.

vcfgenomicsbioinformaticsvariantcli

chgttyyr

Apache-2.0

github.com/chgttyyr/moonbit-vcfkit

Updated 2 months ago

51 downloads

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